PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 746aa    MW: 77771.2 Da    PI: 5.8649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-19559655295
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                      +kvl++sdv+++gr+vlpkk ae h  ++k++ ++t+ +ed  ++++W++k+++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++ ++
  LPERR01G35880.1 559 QKVLKQSDVGSLGRIVLPKKEAEIHmpELKTRDGITIPMEDiGTSQVWNMKYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiKS 649
                      79********************999**999***********7777*******99777777777777.********************..66688 PP

                      E..EEE CS
               B3  90 felvvk 95 
                      ++++++
  LPERR01G35880.1 650 GKYLIR 655
                      877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-27550664IPR015300DNA-binding pseudobarrel domain
CDDcd100151.02E-30556657No hitNo description
SuperFamilySSF1019361.31E-21557652IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.2E-18558660IPR003340B3 DNA binding domain
PROSITE profilePS5086310.165558660IPR003340B3 DNA binding domain
PfamPF023622.7E-15559654IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MDASAAGSSA THSHGKQGGG GGGGGGRGKA PAAEIRGGAA RGDDFLFAAA DDTFPNLPDF  60
PCLSSPSSST FSSSSSSSNS SSAFTTAAGG GGGGVTGGEP SEPASAADGF DDLADIDQLL  120
DLASLSVPWD VAEPLFPDDD VGMMMEDAIS PQPPHHQVDG GGEDGAAEYC NTGDEKAVVE  180
SPVGGGDACM AAEEDQAPDD LPGFFMEWLT SNREYISADD LRSIRLRRST IEAAAERLGG  240
GRQGTMQLLK LILTWVQNHH LQNKKRPRTA MDEAAAAAAS SEPSPGYEFP SSGAQEMASA  300
AAGTSWMPYA FTAAPPAYGG EAATAMYQPY NFQQSCSTSS VVVSTQPFSP PTAPPAAAAA  360
AADMHAWPPQ QFGPFAGSST GSYTMPSVVP PPFTAGFAGQ YSGMCSPRLA AGGAVEPSAT  420
KEARKKRMAR QRRLSCLQQQ RSQQINLSQI QISGHPQEPC PRAANSAPVT PSSVGWGGIW  480
STPAAGQIMQ NPLSNRPINN PNPSPTPAKQ QKPSPQEKPK PKPKPAAAQE ESSQQSPSSE  540
KRQGGTKSTA DKNLRFLLQK VLKQSDVGSL GRIVLPKKEA EIHMPELKTR DGITIPMEDI  600
GTSQVWNMKY RFWPNNKSRM YLLENTGDFV RSNELQEGDF IVIYSDIKSG KYLIRGVKVR  660
RAPQEQGNNS SGAVGKHKNG CPEKAGVSDT KAGEGEVDGG SVDGAAAGGG GGKPDGGACK  720
DKSPHGVRRS RQEAAAASMN QMAVSI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645206.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein VP1
SwissprotP373980.0VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLA0A0D9V9D10.0A0A0D9V9D1_9ORYZ; Uncharacterized protein
STRINGOB01G50120.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.19e-59B3 family protein